GalaxyWEB

Exmaple_Site(Str)

No	Ligand Name	Ligand Structure	Templates for protein-ligand complex
1	FMN		1B1C_A, 4H2D_A, 4H2D_B, 1BVY_F, 3HR4_A, 3HR4_C, 4OXX_A, 1YKG_A, 2M6S_A, 2WC1_A, 3F6R_B
2	FAD		2BF4_A, 2BPO_A

No	Ligand Name	Binding Residues	Interaction Analysis
1	FMN	26S 27Q 28T 29G 30T 31A 78A 79T 80Y 81G 113L 114G 115N 118Y 120H 121F 122N 148D 152L	LINK
2	FAD	28T 30T 80Y 114G 115N 118Y 148D	LINK

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Information
The data will be stored in the server only for 30 days.
Ligands predicted to bind:
GalaxyWEB provides up to 3 predictions for each query.
Predicted ligand-binding residues:
Ligand-binding residues depends on the definition of residue-ligand contact. If the distance between an amino acid residue and a ligand atom is less than the sum of van der waals radii of the two atoms + 0.5 A, the residue is considered as a binding site residue.
Binding site interaction analysis:
Interactions at the predicted ligand binding site are analyzed using LIGPLOT.
Predicted binding poses:
Predicted binding poses can be downloaded in the PDB format or viewed in PV.

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