GalaxyWEB

Example_Site(Seq)

No	Ligand Name	Templates for protein-ligand complex
1	HMH	2GM8_D, 2F2G_A, 2F2G_B, 2Q4X_B
2	PO4	1RTW_B, 1RTW_D
3	PF1	2QCX_A

No	Ligand Name	Binding Residues	Interaction Analysis
1	HMH	44D 47Y 48L 137C 141Y 167Y 171M 211F	LINK
2	PO4	48L 83V 167Y 171M	LINK
3	PF1	44D 47Y 48L 51F 78M 137C 138P 141Y 167Y 171M 211F	LINK

View in PV [Model 1] [Model 2] [Model 3]

Download [Model 1] [Model 2] [Model 3]

Ligand Name	Ligand Structure	Templates for protein-ligand complex	Re-run
HXD		4WX0_B	Submit

Information
The data will be stored in the server only for 30 days.
Ligands predicted to bind:
GalaxyWEB provides up to 3 predictions for each query.
Predicted ligand-binding residues:
Ligand-binding residues depends on the definition of residue-ligand contact. If the distance between an amino acid residue and a ligand atom is less than the sum of van der waals radii of the two atoms + 0.5 A, the residue is considered as a binding site residue.
Binding site interaction analysis:
Interactions at the predicted ligand binding site are analyzed using LIGPLOT.
Predicted binding poses:
Predicted binding poses can be downloaded in the PDB format or viewed in PV.

A web server for protein structure prediction, refinement, and related methods