GalaxyWEB

Protein oligomer structure is predicted from a monomer sequence or structure.

User Information
Job name
E-mail address (Optional)

Query Protein Information
SEQUENCE (≤1000 AA)
or PDB file (≤1000 AA)	Protein Structure File (allowed file extensions: pdb, txt)
Oligomeric State (Optional)
Oligomeric state ( eg. 2, 3, ..)
Loops or Termini to be Refined (5aa<=len<=20aa, Optional) can be used only when monomer structure (PDB file) is provided.
Region 1	Start , End
Region 2	Start , End
Region 3	Start , End

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Help

• Information
• PDB File: File Format
• E-mail: Average run time is 6h~12h. If e-mail address is given, the server sends notifications automatically. If not, the user has to bookmark the report page address.
• Oligomeric State: It should be given in integer number (e.g. 2 for dimer). If the oligomeric state is not provided, the server predicts the oligomeric state automatically.
• Loops/Termini to be Refined: This option can be used only when monomer "structure" is provided.

Example

• Prediction from a protein sequence
  • SEQ: HOMOMER.fasta
  • Oligomeric State: 2
  • Report: [View]
• Prediction from a protein structure
  • PDB file: HOMOMER.pdb
  • Oligomeric State: 2
  • Region 1: Start (155) End (161)
  • Report: [View]